Escherichia flexneri
Isolate HQ 5S/16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers ECO5_060
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.85%
CheckM Contamination 0.38%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 2
tRNA Count 17
Contig Count 385
N50 Contigs 54,218 bp
Longest Contig 200,273 bp
Scaffold Count 379
N50 Scaffolds 55,744 bp
Longest Scaffold 200,273 bp
Genome Size 5,016,218 bp
Protein Count 4,999
Coding Density 87.55%
GC Percentage 50.46%
Ambiguous Bases 5
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM144056v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04100267
Country Belgium
Date 2015-11-6
Genbank Assembly Accession GCA_001440565.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source feces
Latitude Longitude None
Molecule Count N/A
CDS Count 5,360
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 6
Species Taxid 562
SSU Count 1
Submitter University of Liege
Taxid 562
Total Gap Length 739
Translation Table 11
tRNA Count (total) 66
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LKCZ00000000.1