Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers ECGM-EL2071
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.93%
CheckM Contamination 0.14%
CheckM Strain Heterogeneity 0.0
5S Count 8
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 188
N50 Contigs 92,553 bp
Longest Contig 196,460 bp
Scaffold Count 188
N50 Scaffolds 92,553 bp
Longest Scaffold 196,460 bp
Genome Size 5,316,725 bp
Protein Count 5,214
Coding Density 87.59%
GC Percentage 50.62%
Ambiguous Bases 427
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM144052v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04088940
Country Lebanon
Date 2015-11-06
Genbank Assembly Accession GCA_001440525.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,687
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 0
Species Taxid 562
SSU Count 9
Submitter LAU
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 94
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJZZ00000000.1