Bradyrhizobium valentinum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Xanthobacteraceae; g__Bradyrhizobium; s__Bradyrhizobium valentinum
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Bradyrhizobiaceae; g__Bradyrhizobium; s__Bradyrhizobium valentinum
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Bradyrhizobiaceae; g__Bradyrhizobium; s__Bradyrhizobium valentinum
NCBI Strain Identifiers LmjM6
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001440405.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 1.95%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 242
N50 Contigs 104,988 bp
Longest Contig 322,626 bp
Scaffold Count 242
N50 Scaffolds 104,988 bp
Longest Scaffold 322,626 bp
Genome Size 9,146,476 bp
Protein Count 8,929
Coding Density 83.28%
GC Percentage 61.88%
Ambiguous Bases 814
GTDB representative GCA_001440405.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM144038v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02689486
Country Spain: Monserrat; Valencia
Date 2015-11-6
Genbank Assembly Accession GCA_001440385.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source root nodules
Latitude Longitude None
Molecule Count N/A
CDS Count 8,676
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 0
Species Taxid 1518501
SSU Count 1
Submitter UPM
Taxid 1518501
Total Gap Length 0
Translation Table 11
tRNA Count (total) 55
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LLXY00000000.1