Colwellia sp001440345
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Alteromonadaceae; g__Colwellia; s__Colwellia sp001440345
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Alteromonadales; f__Colwelliaceae; g__Colwellia; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Alteromonadales; f__Colwelliaceae; g__Colwellia; s__Colwellia sp. TT2012
NCBI Strain Identifiers TT2012
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.33%
CheckM Contamination 2.61%
CheckM Strain Heterogeneity 8.33
5S Count 10
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 223
N50 Contigs 710,405 bp
Longest Contig 1,038,875 bp
Scaffold Count 223
N50 Scaffolds 710,405 bp
Longest Scaffold 1,038,875 bp
Genome Size 4,420,600 bp
Protein Count 3,979
Coding Density 82.89%
GC Percentage 39.53%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM144034v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04096880
Country Pacific Ocean: the Tonga Trench
Date 2015-11-6
Genbank Assembly Accession GCA_001440345.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source marine sediment
Latitude Longitude 22.94 S 174.73 W
Molecule Count N/A
CDS Count 3,888
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 0
Species Taxid 1720342
SSU Count 2
Submitter University of California San Diego
Taxid 1720342
Total Gap Length 0
Translation Table 11
tRNA Count (total) 84
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJYX00000000.1