Pseudomonas_E jessenii
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E jessenii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas fluorescens
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas fluorescens group; s__Pseudomonas fluorescens
NCBI Strain Identifiers GW456-L13
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002236115.1)
Genome Characteristics
CheckM Completeness 98.83%
CheckM Contamination 0.12%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 3
N50 Contigs 5,126,615 bp
Longest Contig 5,126,615 bp
Scaffold Count 2
N50 Scaffolds 5,755,312 bp
Longest Scaffold 5,755,312 bp
Genome Size 5,757,432 bp
Protein Count 5,149
Coding Density 87.67%
GC Percentage 59.85%
Ambiguous Bases N/A
GTDB representative GCA_002236115.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM144032v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04094109
Country USA: Oak Ridge; TN
Date 2015-11-06
Genbank Assembly Accession GCA_001440325.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source ground water from background well at DOE s FRC site at Oak Ridge
Latitude Longitude None
Molecule Count N/A
CDS Count 5,318
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 1
Species Taxid 294
SSU Count 7
Submitter Lawrence Berkeley National Laboratory
Taxid 294
Total Gap Length 788
Translation Table 11
tRNA Count (total) 71
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LKBJ00000000.1