Bradyrhizobium pachyrhizi
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Xanthobacteraceae; g__Bradyrhizobium; s__Bradyrhizobium pachyrhizi
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Bradyrhizobiaceae; g__Bradyrhizobium; s__Bradyrhizobium pachyrhizi
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Bradyrhizobiaceae; g__Bradyrhizobium; s__Bradyrhizobium pachyrhizi
NCBI Strain Identifiers BR3262
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001189245.1)
Genome Characteristics
CheckM Completeness 98.93%
CheckM Contamination 0.61%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 333
N50 Contigs 56,572 bp
Longest Contig 174,050 bp
Scaffold Count 116
N50 Scaffolds 174,050 bp
Longest Scaffold 484,018 bp
Genome Size 8,965,178 bp
Protein Count 8,386
Coding Density 83.69%
GC Percentage 63.76%
Ambiguous Bases 500
GTDB representative GCA_001189245.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name BR3262k88v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04088244
Country Brazil
Date 2015-11-6
Genbank Assembly Accession GCA_001440015.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source cowpea nodules from Atlantic Forest Region of Brazil
Latitude Longitude None
Molecule Count N/A
CDS Count 8,241
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 217
Species Taxid 280333
SSU Count 1
Submitter Embrapa Agrobiologia
Taxid 280333
Total Gap Length 9384
Translation Table 11
tRNA Count (total) 50
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJYE00000000.1