Pseudomonas_E sp002966775
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E sp002966775
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas lactis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas lactis
NCBI Strain Identifiers DSM 29142
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002966775.1)
Genome Characteristics
CheckM Completeness 99.8%
CheckM Contamination 1.16%
CheckM Strain Heterogeneity 10.0
5S Count 4
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 60
N50 Contigs 284,093 bp
Longest Contig 584,982 bp
Scaffold Count 60
N50 Scaffolds 284,093 bp
Longest Scaffold 584,982 bp
Genome Size 6,730,325 bp
Protein Count 6,155
Coding Density 88.35%
GC Percentage 59.55%
Ambiguous Bases N/A
GTDB representative GCA_002966775.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name MG775
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03332053
Country Germany: Southern Germany
Date 2015-11-06
Genbank Assembly Accession GCA_001439745.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source raw milk
Latitude Longitude None
Molecule Count N/A
CDS Count 6,310
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 0
Species Taxid 1615674
SSU Count 1
Submitter Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung (ZIEL), WZW, TUM
Taxid 1615674
Total Gap Length 0
Translation Table 11
tRNA Count (total) 59
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JYLP00000000.1