Pseudomonas_E libanensis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E libanensis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas libanensis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas fluorescens group; s__Pseudomonas libanensis
NCBI Strain Identifiers DSM 17149
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.8%
CheckM Contamination 0.68%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 43
N50 Contigs 326,504 bp
Longest Contig 640,011 bp
Scaffold Count 43
N50 Scaffolds 326,504 bp
Longest Scaffold 640,011 bp
Genome Size 6,214,234 bp
Protein Count 5,540
Coding Density 89.17%
GC Percentage 60.18%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name G8685
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03328793
Country Lebanon
Date 2015-11-6
Genbank Assembly Accession GCA_001439685.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source spring water
Latitude Longitude None
Molecule Count N/A
CDS Count 5,650
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 0
Species Taxid 75588
SSU Count 2
Submitter Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung (ZIEL), WZW, TUM
Taxid 75588
Total Gap Length 0
Translation Table 11
tRNA Count (total) 58
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JYLH00000000.1