Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis 10
NCBI Strain Identifiers 10
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 98.83%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 312
N50 Contigs 28,761 bp
Longest Contig 95,561 bp
Scaffold Count 100
N50 Scaffolds 130,652 bp
Longest Scaffold 261,642 bp
Genome Size 4,313,998 bp
Protein Count 4,116
Coding Density 89.27%
GC Percentage 65.61%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143945v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04247103
Country China
Date 2015-11-6
Genbank Assembly Accession GCA_001439455.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,202
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 212
Species Taxid 1773
SSU Count 1
Submitter BGI Research Institute
Taxid 1350393
Total Gap Length 11061
Translation Table 11
tRNA Count (total) 44
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AMYE00000000.1