Lancefieldella rimae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Coriobacteriia; o__Coriobacteriales; f__Atopobiaceae; g__Lancefieldella; s__Lancefieldella rimae
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Coriobacteriia; o__Coriobacteriales; f__Atopobiaceae; g__Atopobium; s__Atopobium rimae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Coriobacteriia; o__Coriobacteriales; f__Atopobiaceae; g__Atopobium; s__Atopobium rimae
NCBI Strain Identifiers DSM 7090
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_000174015.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 23
N50 Contigs 129,191 bp
Longest Contig 409,180 bp
Scaffold Count 9
N50 Scaffolds 464,339 bp
Longest Scaffold 566,490 bp
Genome Size 1,629,936 bp
Protein Count 1,482
Coding Density 89.00%
GC Percentage 49.26%
Ambiguous Bases N/A
GTDB representative GCA_000174015.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143888v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02797791
Country None
Date 2015-11-6
Genbank Assembly Accession GCA_001438885.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source gingival crevice
Latitude Longitude None
Molecule Count N/A
CDS Count 1,478
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 14
Species Taxid 1383
SSU Count 1
Submitter Shanghai Majorbio
Taxid 1383
Total Gap Length 2590
Translation Table 11
tRNA Count (total) 45
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JQCP00000000.1