Ligilactobacillus ceti
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Ligilactobacillus; s__Ligilactobacillus ceti
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus ceti
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus ceti; x__Lactobacillus ceti DSM 22408
NCBI Strain Identifiers DSM 22408
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_000423245.1)
Genome Characteristics
CheckM Completeness 97.91%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 39
N50 Contigs 155,108 bp
Longest Contig 368,646 bp
Scaffold Count 26
N50 Scaffolds 810,013 bp
Longest Scaffold 810,013 bp
Genome Size 1,397,811 bp
Protein Count 1,289
Coding Density 88.44%
GC Percentage 33.73%
Ambiguous Bases N/A
GTDB representative GCA_000423245.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143878v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02797784
Country None
Date 2015-11-6
Genbank Assembly Accession GCA_001438785.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source beaked whales
Latitude Longitude None
Molecule Count N/A
CDS Count 1,282
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 13
Species Taxid 395085
SSU Count 1
Submitter Shanghai Majorbio
Taxid 1122146
Total Gap Length 800
Translation Table 11
tRNA Count (total) 55
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JQBZ00000000.1