Pediococcus cellicola
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Pediococcus; s__Pediococcus cellicola
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Pediococcus; s__Pediococcus cellicola
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Pediococcus; s__Pediococcus cellicola
NCBI Strain Identifiers DSM 17757
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.38%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 22
N50 Contigs 218,167 bp
Longest Contig 360,895 bp
Scaffold Count 22
N50 Scaffolds 218,167 bp
Longest Scaffold 360,895 bp
Genome Size 2,038,400 bp
Protein Count 1,960
Coding Density 87.37%
GC Percentage 39.04%
Ambiguous Bases 6
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM143865v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02797811
Country None
Date 2015-11-6
Genbank Assembly Accession GCA_001438655.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source distilled-spirit-fermenting cellar
Latitude Longitude None
Molecule Count N/A
CDS Count 1,943
Refseq Category representative genome
Seq Rel Date 2015/11/06
Spanned Gaps 0
Species Taxid 319652
SSU Count 1
Submitter Shanghai Majorbio
Taxid 319652
Total Gap Length 0
Translation Table 11
tRNA Count (total) 44
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JQBR00000000.1