Pediococcus argentinicus
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Pediococcus; s__Pediococcus argentinicus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Pediococcus; s__Pediococcus argentinicus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Pediococcus; s__Pediococcus argentinicus
NCBI Strain Identifiers DSM 23026
GTDB Type Material Designation type strain of species
GTDB Representative of Species True
Genome Characteristics
CheckM Completeness 99.23%
CheckM Contamination 0.62%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 95
N50 Contigs 43,656 bp
Longest Contig 139,659 bp
Scaffold Count 93
N50 Scaffolds 43,657 bp
Longest Scaffold 141,367 bp
Genome Size 1,764,961 bp
Protein Count 1,804
Coding Density 89.29%
GC Percentage 36.67%
Ambiguous Bases 0
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143760v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02797819
Country Argentina
Date 2015-11-6
Genbank Assembly Accession GCA_001437605.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source fermented wheat flour
Latitude Longitude None
Molecule Count 0
Protein Count 1,779
Refseq Category representative genome
Seq Rel Date 2015/11/06
Spanned Gaps 2
Species Taxid 480391
SSU Count 1
Submitter Shanghai Majorbio
Taxid 480391
Total Gap Length 250
Translation Table 11
tRNA Count (total) 41
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JQCQ00000000.1