Paucilactobacillus hokkaidonensis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Paucilactobacillus; s__Paucilactobacillus hokkaidonensis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus hokkaidonensis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus hokkaidonensis
NCBI Strain Identifiers DSM 26202
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_000829395.1)
Genome Characteristics
CheckM Completeness 99.46%
CheckM Contamination 0.82%
CheckM Strain Heterogeneity 50.0
5S Count 1
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 85
N50 Contigs 84,772 bp
Longest Contig 204,651 bp
Scaffold Count 84
N50 Scaffolds 84,772 bp
Longest Scaffold 204,651 bp
Genome Size 2,329,330 bp
Protein Count 2,303
Coding Density 87.30%
GC Percentage 38.13%
Ambiguous Bases 7
GTDB representative GCA_000829395.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143750v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02797790
Country Japan
Date 2015-11-6
Genbank Assembly Accession GCA_001437505.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source subarctic timothy grass
Latitude Longitude None
Molecule Count N/A
CDS Count 2,258
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 1
Species Taxid 1193095
SSU Count 2
Submitter Shanghai Majorbio
Taxid 1193095
Total Gap Length 208
Translation Table 11
tRNA Count (total) 47
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JQCH00000000.1