Lactobacillus amylovorus
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus amylovorus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus amylovorus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus amylovorus; x__Lactobacillus amylovorus DSM 16698
NCBI Strain Identifiers DSM 16698
GTDB Type Material Designation type strain of heterotypic synonym
GTDB Representative of Species False (representative is GCA_002706375.1)
Genome Characteristics
CheckM Completeness 98.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 200
N50 Contigs 32,525 bp
Longest Contig 92,523 bp
Scaffold Count 162
N50 Scaffolds 34,021 bp
Longest Scaffold 92,523 bp
Genome Size 2,001,630 bp
Protein Count 2,014
Coding Density 86.98%
GC Percentage 37.82%
Ambiguous Bases N/A
GTDB representative GCA_002706375.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143736v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02797775
Country None
Date 2015-11-6
Genbank Assembly Accession GCA_001437365.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source cattle waste-corn fermentations
Latitude Longitude None
Molecule Count N/A
CDS Count 1,982
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 38
Species Taxid 1604
SSU Count 1
Submitter Shanghai Majorbio
Taxid 695563
Total Gap Length 9576
Translation Table 11
tRNA Count (total) 52
Type Material assembly from synonym type material
Unspanned Gaps 0
Version Status latest
WGS Master JQBQ00000000.1