Pediococcus damnosus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Pediococcus; s__Pediococcus damnosus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Pediococcus; s__Pediococcus damnosus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Pediococcus; s__Pediococcus damnosus
NCBI Strain Identifiers DSM 20331
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (12 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.38%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 201
N50 Contigs 20,859 bp
Longest Contig 70,015 bp
Scaffold Count 201
N50 Scaffolds 20,859 bp
Longest Scaffold 70,015 bp
Genome Size 2,191,735 bp
Protein Count 2,129
Coding Density 86.06%
GC Percentage 38.23%
Ambiguous Bases 14
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM143725v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02797815
Country None
Date 2015-11-6
Genbank Assembly Accession GCA_001437255.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,091
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 0
Species Taxid 51663
SSU Count 1
Submitter Shanghai Majorbio
Taxid 51663
Total Gap Length 0
Translation Table 11
tRNA Count (total) 48
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JQBD00000000.1