Pediococcus acidilactici
Isolate HQ 16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Pediococcus; s__Pediococcus acidilactici
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Pediococcus; s__Pediococcus acidilactici
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Pediococcus; x__Pediococcus acidilactici group; s__Pediococcus acidilactici
NCBI Strain Identifiers DSM 19927
GTDB Type Material Designation type strain of heterotypic synonym
GTDB Representative of Species False (representative is GCA_000146325.1)
Genome Characteristics
CheckM Completeness 99.38%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 32
N50 Contigs 318,866 bp
Longest Contig 464,364 bp
Scaffold Count 31
N50 Scaffolds 318,866 bp
Longest Scaffold 464,364 bp
Genome Size 2,040,711 bp
Protein Count 1,973
Coding Density 87.35%
GC Percentage 42.13%
Ambiguous Bases 4
GTDB representative GCA_000146325.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143711v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02797813
Country None
Date 2015-11-6
Genbank Assembly Accession GCA_001437115.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source ryegrass silage
Latitude Longitude None
Molecule Count N/A
CDS Count 1,962
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 1
Species Taxid 1254
SSU Count 1
Submitter Shanghai Majorbio
Taxid 1254
Total Gap Length 285
Translation Table 11
tRNA Count (total) 44
Type Material assembly from synonym type material
Unspanned Gaps 0
Version Status latest
WGS Master JQCC00000000.1