Limosilactobacillus secaliphilus
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Limosilactobacillus; s__Limosilactobacillus secaliphilus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus secaliphilus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus secaliphilus
NCBI Strain Identifiers DSM 17896
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 98.91%
CheckM Contamination 0.27%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 15
N50 Contigs 264,442 bp
Longest Contig 432,454 bp
Scaffold Count 11
N50 Scaffolds 286,054 bp
Longest Scaffold 629,925 bp
Genome Size 1,646,143 bp
Protein Count 1,511
Coding Density 89.04%
GC Percentage 47.72%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143705v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02797776
Country None
Date 2015-11-6
Genbank Assembly Accession GCA_001437055.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source type II sourdough fermentation
Latitude Longitude None
Molecule Count N/A
CDS Count 1,492
Refseq Category representative genome
Seq Rel Date 2015/11/06
Spanned Gaps 4
Species Taxid 396268
SSU Count 1
Submitter Shanghai Majorbio
Taxid 396268
Total Gap Length 40
Translation Table 11
tRNA Count (total) 58
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JQBW00000000.1