Ligilactobacillus acidipiscis
Isolate HQ 16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Ligilactobacillus; s__Ligilactobacillus acidipiscis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus acidipiscis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus acidipiscis
NCBI Strain Identifiers DSM 15353
GTDB Type Material Designation type strain of heterotypic synonym
GTDB Representative of Species False (representative is GCA_002117995.1)
Genome Characteristics
CheckM Completeness 99.3%
CheckM Contamination 1.83%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 3
23S Count 1
tRNA Count 18
Contig Count 350
N50 Contigs 14,545 bp
Longest Contig 41,016 bp
Scaffold Count 297
N50 Scaffolds 15,874 bp
Longest Scaffold 64,151 bp
Genome Size 2,318,091 bp
Protein Count 2,241
Coding Density 81.15%
GC Percentage 39.06%
Ambiguous Bases 1
GTDB representative GCA_002117995.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143694v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02797774
Country Thailand
Date 2015-11-6
Genbank Assembly Accession GCA_001436945.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source fermented fish
Latitude Longitude None
Molecule Count N/A
CDS Count 2,199
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 53
Species Taxid 89059
SSU Count 3
Submitter Shanghai Majorbio
Taxid 89059
Total Gap Length 16455
Translation Table 11
tRNA Count (total) 44
Type Material assembly from synonym type material
Unspanned Gaps 0
Version Status latest
WGS Master JQBK00000000.1