Pediococcus claussenii
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Pediococcus; s__Pediococcus claussenii
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Pediococcus; s__Pediococcus claussenii
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Pediococcus; s__Pediococcus claussenii
NCBI Strain Identifiers DSM 14800
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_000237995.2)
Genome Characteristics
CheckM Completeness 97.84%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 46
N50 Contigs 204,200 bp
Longest Contig 304,195 bp
Scaffold Count 44
N50 Scaffolds 219,838 bp
Longest Scaffold 304,195 bp
Genome Size 1,879,349 bp
Protein Count 1,832
Coding Density 87.70%
GC Percentage 36.74%
Ambiguous Bases 6
GTDB representative GCA_000237995.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143690v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02797810
Country None
Date 2015-11-6
Genbank Assembly Accession GCA_001436905.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source beer
Latitude Longitude None
Molecule Count N/A
CDS Count 1,810
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 2
Species Taxid 187452
SSU Count 1
Submitter Shanghai Majorbio
Taxid 187452
Total Gap Length 180
Translation Table 11
tRNA Count (total) 47
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JQBB00000000.1