Pediococcus acidilactici
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Pediococcus; s__Pediococcus acidilactici
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Pediococcus; s__Pediococcus acidilactici
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Pediococcus; x__Pediococcus acidilactici group; s__Pediococcus acidilactici
NCBI Strain Identifiers AS1.2696
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000146325.1)
Genome Characteristics
CheckM Completeness 99.38%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 18
N50 Contigs 405,421 bp
Longest Contig 608,266 bp
Scaffold Count 18
N50 Scaffolds 405,421 bp
Longest Scaffold 608,266 bp
Genome Size 1,928,516 bp
Protein Count 1,820
Coding Density 87.28%
GC Percentage 42.13%
Ambiguous Bases 1
GTDB representative GCA_000146325.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM143679v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02797809
Country None
Date 2015-11-6
Genbank Assembly Accession GCA_001436795.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 1,830
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 0
Species Taxid 1254
SSU Count 1
Submitter Shanghai Majorbio
Taxid 1254
Total Gap Length 0
Translation Table 11
tRNA Count (total) 43
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JQAQ00000000.1