Secundilactobacillus similis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Secundilactobacillus; s__Secundilactobacillus similis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus similis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus similis; x__Lactobacillus similis DSM 23365 = JCM 2765
NCBI Strain Identifiers DSM 23365
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_001311075.1)
Genome Characteristics
CheckM Completeness 99.38%
CheckM Contamination 2.5%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 249
N50 Contigs 33,478 bp
Longest Contig 126,343 bp
Scaffold Count 181
N50 Scaffolds 61,916 bp
Longest Scaffold 149,654 bp
Genome Size 3,476,170 bp
Protein Count 3,189
Coding Density 82.04%
GC Percentage 46.98%
Ambiguous Bases N/A
GTDB representative GCA_001311075.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143659v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369474
Country Thailand
Date 2015-11-6
Genbank Assembly Accession GCA_001436595.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source fermented cane molasses at alcohol plants
Latitude Longitude None
Molecule Count N/A
CDS Count 3,119
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 68
Species Taxid 414682
SSU Count 2
Submitter Shanghai Majorbio
Taxid 1423804
Total Gap Length 3340
Translation Table 11
tRNA Count (total) 61
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AYZM00000000.1