Agrilactobacillus composti
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Agrilactobacillus; s__Agrilactobacillus composti
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus composti
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus composti; x__Lactobacillus composti DSM 18527 = JCM 14202
NCBI Strain Identifiers DSM 18527
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.48%
CheckM Contamination 0.52%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 4
tRNA Count 20
Contig Count 114
N50 Contigs 105,788 bp
Longest Contig 317,943 bp
Scaffold Count 88
N50 Scaffolds 148,390 bp
Longest Scaffold 365,928 bp
Genome Size 3,467,402 bp
Protein Count 3,354
Coding Density 88.31%
GC Percentage 43.95%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143637v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369442
Country Japan
Date 2015-11-6
Genbank Assembly Accession GCA_001436375.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source composting material of distilled shochu residue
Latitude Longitude None
Molecule Count N/A
CDS Count 3,314
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 26
Species Taxid 398555
SSU Count 1
Submitter Shanghai Majorbio
Taxid 1423734
Total Gap Length 696
Translation Table 11
tRNA Count (total) 55
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AZGA00000000.1