Ligilactobacillus aviarius
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Ligilactobacillus; s__Ligilactobacillus aviarius
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus aviarius
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus aviarius; sb__Lactobacillus aviarius subsp. aviarius; x__Lactobacillus aviarius subsp. aviarius DSM 20655
NCBI Strain Identifiers DSM 20655
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.48%
CheckM Contamination 1.57%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 37
N50 Contigs 132,868 bp
Longest Contig 231,116 bp
Scaffold Count 24
N50 Scaffolds 210,033 bp
Longest Scaffold 280,343 bp
Genome Size 1,680,526 bp
Protein Count 1,595
Coding Density 89.37%
GC Percentage 40.12%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143631v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369392
Country None
Date 2015-11-6
Genbank Assembly Accession GCA_001436315.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source feces
Latitude Longitude None
Molecule Count N/A
CDS Count 1,582
Refseq Category representative genome
Seq Rel Date 2015/11/06
Spanned Gaps 13
Species Taxid 1606
SSU Count 1
Submitter Shanghai Majorbio
Taxid 1423821
Total Gap Length 419
Translation Table 11
tRNA Count (total) 52
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AYZA00000000.1