Ligilactobacillus agilis
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Ligilactobacillus; s__Ligilactobacillus agilis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus agilis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus agilis; x__Lactobacillus agilis DSM 20509
NCBI Strain Identifiers DSM 20509
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (13 genomes in species cluster)
Genome Characteristics
CheckM Completeness 98.69%
CheckM Contamination 0.26%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 97
N50 Contigs 51,424 bp
Longest Contig 123,911 bp
Scaffold Count 72
N50 Scaffolds 65,699 bp
Longest Scaffold 201,155 bp
Genome Size 2,058,058 bp
Protein Count 2,054
Coding Density 88.74%
GC Percentage 41.74%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143621v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369373
Country None
Date 2015-11-6
Genbank Assembly Accession GCA_001436215.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source municipal sewage
Latitude Longitude None
Molecule Count N/A
CDS Count 2,001
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 25
Species Taxid 1601
SSU Count 1
Submitter Shanghai Majorbio
Taxid 1423718
Total Gap Length 1087
Translation Table 11
tRNA Count (total) 75
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AYYP00000000.1