Amylolactobacillus amylophilus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Amylolactobacillus; s__Amylolactobacillus amylophilus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus amylophilus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus amylophilus; x__Lactobacillus amylophilus DSM 20533 = JCM 1125
NCBI Strain Identifiers DSM 20533
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_001936335.1)
Genome Characteristics
CheckM Completeness 98.95%
CheckM Contamination 1.05%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 36
N50 Contigs 152,786 bp
Longest Contig 564,509 bp
Scaffold Count 33
N50 Scaffolds 279,750 bp
Longest Scaffold 564,509 bp
Genome Size 1,556,969 bp
Protein Count 1,577
Coding Density 88.34%
GC Percentage 43.61%
Ambiguous Bases N/A
GTDB representative GCA_001936335.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143618v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369500
Country None
Date 2015-11-6
Genbank Assembly Accession GCA_001436185.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source swine waste-corn fermentation
Latitude Longitude None
Molecule Count N/A
CDS Count 1,564
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 3
Species Taxid 1603
SSU Count 2
Submitter Shanghai Majorbio
Taxid 1423721
Total Gap Length 87
Translation Table 11
tRNA Count (total) 53
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AYYS00000000.1