Ligilactobacillus murinus
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Ligilactobacillus; s__Ligilactobacillus murinus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus murinus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus murinus; x__Lactobacillus murinus DSM 20452 = NBRC 14221
NCBI Strain Identifiers DSM 20452
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_001591685.1)
Genome Characteristics
CheckM Completeness 99.48%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 3
23S Count 1
tRNA Count 19
Contig Count 205
N50 Contigs 39,145 bp
Longest Contig 250,741 bp
Scaffold Count 176
N50 Scaffolds 42,833 bp
Longest Scaffold 253,673 bp
Genome Size 2,183,163 bp
Protein Count 2,126
Coding Density 87.12%
GC Percentage 40.03%
Ambiguous Bases N/A
GTDB representative GCA_001591685.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143601v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369407
Country None
Date 2015-11-6
Genbank Assembly Accession GCA_001436015.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source intestine
Latitude Longitude None
Molecule Count N/A
CDS Count 2,114
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 29
Species Taxid 1622
SSU Count 3
Submitter Shanghai Majorbio
Taxid 1423772
Total Gap Length 1180
Translation Table 11
tRNA Count (total) 55
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AYYN00000000.1