Ligilactobacillus salivarius
Isolate HQ 5S/16S/23S 14 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Ligilactobacillus; s__Ligilactobacillus salivarius
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus salivarius
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus salivarius; x__Lactobacillus salivarius DSM 20555 = ATCC 11741
NCBI Strain Identifiers DSM 20555
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (88 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.48%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 14
Contig Count 62
N50 Contigs 80,533 bp
Longest Contig 244,105 bp
Scaffold Count 62
N50 Scaffolds 80,533 bp
Longest Scaffold 244,105 bp
Genome Size 1,982,601 bp
Protein Count 1,949
Coding Density 89.22%
GC Percentage 32.50%
Ambiguous Bases 7
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM143595v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369414
Country None
Date 2015-11-6
Genbank Assembly Accession GCA_001435955.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source saliva
Latitude Longitude None
Molecule Count N/A
CDS Count 1,931
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 0
Species Taxid 1624
SSU Count 1
Submitter Shanghai Majorbio
Taxid 1423799
Total Gap Length 0
Translation Table 11
tRNA Count (total) 24
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AYYT00000000.1