Limosilactobacillus vaginalis
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Limosilactobacillus; s__Limosilactobacillus vaginalis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus vaginalis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus vaginalis; x__Lactobacillus vaginalis DSM 5837 = ATCC 49540
NCBI Strain Identifiers DSM 5837
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_000159435.1)
Genome Characteristics
CheckM Completeness 99.46%
CheckM Contamination 1.09%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 150
N50 Contigs 28,732 bp
Longest Contig 95,389 bp
Scaffold Count 149
N50 Scaffolds 30,329 bp
Longest Scaffold 95,389 bp
Genome Size 1,787,468 bp
Protein Count 1,776
Coding Density 88.09%
GC Percentage 40.46%
Ambiguous Bases 12
GTDB representative GCA_000159435.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143591v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369417
Country None
Date 2015-11-6
Genbank Assembly Accession GCA_001435915.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source vaginal swab from patient with trichomoniasis
Latitude Longitude None
Molecule Count N/A
CDS Count 1,726
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 1
Species Taxid 1633
SSU Count 2
Submitter Shanghai Majorbio
Taxid 1423814
Total Gap Length 221
Translation Table 11
tRNA Count (total) 47
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AZGL00000000.1