Lentilactobacillus farraginis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lentilactobacillus; s__Lentilactobacillus farraginis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus farraginis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus farraginis; x__Lactobacillus farraginis DSM 18382 = JCM 14108
NCBI Strain Identifiers DSM 18382
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_000583655.1)
Genome Characteristics
CheckM Completeness 99.25%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 166
N50 Contigs 48,900 bp
Longest Contig 184,809 bp
Scaffold Count 157
N50 Scaffolds 51,465 bp
Longest Scaffold 184,809 bp
Genome Size 2,859,511 bp
Protein Count 2,814
Coding Density 85.26%
GC Percentage 42.05%
Ambiguous Bases N/A
GTDB representative GCA_000583655.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143587v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369501
Country Japan
Date 2015-11-6
Genbank Assembly Accession GCA_001435875.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source composting material of distilled shochu residue
Latitude Longitude None
Molecule Count N/A
CDS Count 2,771
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 9
Species Taxid 390841
SSU Count 1
Submitter Shanghai Majorbio
Taxid 1423743
Total Gap Length 292
Translation Table 11
tRNA Count (total) 61
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AZFY00000000.1