Ligilactobacillus equi
Isolate HQ 16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Ligilactobacillus; s__Ligilactobacillus equi
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus equi
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus equi; x__Lactobacillus equi DSM 15833 = JCM 10991
NCBI Strain Identifiers DSM 15833
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_000615765.1)
Genome Characteristics
CheckM Completeness 99.21%
CheckM Contamination 1.75%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 3
23S Count 1
tRNA Count 18
Contig Count 229
N50 Contigs 38,408 bp
Longest Contig 168,913 bp
Scaffold Count 205
N50 Scaffolds 46,352 bp
Longest Scaffold 168,913 bp
Genome Size 2,284,210 bp
Protein Count 2,312
Coding Density 86.80%
GC Percentage 39.03%
Ambiguous Bases N/A
GTDB representative GCA_000615765.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143573v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369395
Country Japan
Date 2015-11-6
Genbank Assembly Accession GCA_001435735.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source feces
Latitude Longitude None
Molecule Count N/A
CDS Count 2,255
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 24
Species Taxid 137357
SSU Count 3
Submitter Shanghai Majorbio
Taxid 1423740
Total Gap Length 1020
Translation Table 11
tRNA Count (total) 59
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AZFH00000000.1