Lentilactobacillus sunkii
Isolate HQ 16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lentilactobacillus; s__Lentilactobacillus sunkii
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus sunkii
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus sunkii; x__Lactobacillus sunkii DSM 19904
NCBI Strain Identifiers DSM 19904
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 98.91%
CheckM Contamination 0.31%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 2
tRNA Count 19
Contig Count 79
N50 Contigs 89,629 bp
Longest Contig 405,054 bp
Scaffold Count 79
N50 Scaffolds 89,629 bp
Longest Scaffold 405,054 bp
Genome Size 2,693,129 bp
Protein Count 2,572
Coding Density 87.48%
GC Percentage 42.06%
Ambiguous Bases 11
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM143557v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369477
Country Japan
Date 2015-11-6
Genbank Assembly Accession GCA_001435575.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source non-salted pickle solution used in production of sunki (Japanese traditional fermented leaves and stems of red turnips)
Latitude Longitude None
Molecule Count N/A
CDS Count 2,551
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 0
Species Taxid 481719
SSU Count 1
Submitter Shanghai Majorbio
Taxid 1423808
Total Gap Length 0
Translation Table 11
tRNA Count (total) 54
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AZEA00000000.1