Companilactobacillus nodensis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Companilactobacillus; s__Companilactobacillus nodensis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus nodensis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus nodensis; x__Lactobacillus nodensis DSM 19682 = JCM 14932 = NBRC 107160
NCBI Strain Identifiers DSM 19682
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_000615905.1)
Genome Characteristics
CheckM Completeness 99.48%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 28
N50 Contigs 220,287 bp
Longest Contig 336,214 bp
Scaffold Count 22
N50 Scaffolds 321,838 bp
Longest Scaffold 621,803 bp
Genome Size 2,683,197 bp
Protein Count 2,663
Coding Density 89.60%
GC Percentage 37.57%
Ambiguous Bases N/A
GTDB representative GCA_000615905.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143555v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369463
Country Japan
Date 2015-11-6
Genbank Assembly Accession GCA_001435555.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Japanese pickles
Latitude Longitude None
Molecule Count N/A
CDS Count 2,616
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 6
Species Taxid 460870
SSU Count 1
Submitter Shanghai Majorbio
Taxid 1423775
Total Gap Length 207
Translation Table 11
tRNA Count (total) 57
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AZDZ00000000.1