Companilactobacillus paralimentarius_B
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Companilactobacillus; s__Companilactobacillus paralimentarius_B
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus paralimentarius
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus paralimentarius; x__Lactobacillus paralimentarius DSM 13961 = JCM 10707
NCBI Strain Identifiers DSM 13961
GTDB Type Material Designation not type material
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.48%
CheckM Contamination 2.09%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 36
N50 Contigs 164,890 bp
Longest Contig 331,544 bp
Scaffold Count 28
N50 Scaffolds 208,708 bp
Longest Scaffold 389,712 bp
Genome Size 2,746,576 bp
Protein Count 2,636
Coding Density 88.86%
GC Percentage 35.12%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143544v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369457
Country South Korea
Date 2015-11-6
Genbank Assembly Accession GCA_001435445.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source fermented vegetable (kimchi)
Latitude Longitude None
Molecule Count N/A
CDS Count 2,588
Refseq Category representative genome
Seq Rel Date 2015/11/06
Spanned Gaps 8
Species Taxid 83526
SSU Count 1
Submitter Shanghai Majorbio
Taxid 1423765
Total Gap Length 143
Translation Table 11
tRNA Count (total) 51
Type Material assembly from synonym type material
Unspanned Gaps 0
Version Status latest
WGS Master AZDH00000000.1