Lactobacillus intestinalis
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus intestinalis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus intestinalis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus intestinalis; x__Lactobacillus intestinalis DSM 6629
NCBI Strain Identifiers DSM 6629
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 98.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 75
N50 Contigs 95,025 bp
Longest Contig 239,861 bp
Scaffold Count 55
N50 Scaffolds 140,912 bp
Longest Scaffold 239,861 bp
Genome Size 2,009,795 bp
Protein Count 1,871
Coding Density 88.62%
GC Percentage 35.35%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143532v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369403
Country None
Date 2015-11-6
Genbank Assembly Accession GCA_001435325.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source intestine
Latitude Longitude None
Molecule Count N/A
CDS Count 1,832
Refseq Category representative genome
Seq Rel Date 2015/11/06
Spanned Gaps 20
Species Taxid 151781
SSU Count 1
Submitter Shanghai Majorbio
Taxid 1423761
Total Gap Length 704
Translation Table 11
tRNA Count (total) 50
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AZGN00000000.1