Lactobacillus kefiranofaciens
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus kefiranofaciens
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus kefiranofaciens
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus kefiranofaciens; sb__Lactobacillus kefiranofaciens subsp. kefiranofaciens; x__Lactobacillus kefiranofaciens subsp. kefiranofaciens DSM 5016 = JCM 6985
NCBI Strain Identifiers DSM 5016
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_900103655.1)
Genome Characteristics
CheckM Completeness 99.03%
CheckM Contamination 0.93%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 134
N50 Contigs 54,815 bp
Longest Contig 232,554 bp
Scaffold Count 133
N50 Scaffolds 54,815 bp
Longest Scaffold 232,554 bp
Genome Size 2,257,219 bp
Protein Count 2,362
Coding Density 88.37%
GC Percentage 37.22%
Ambiguous Bases 9
GTDB representative GCA_900103655.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143527v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369453
Country None
Date 2015-11-6
Genbank Assembly Accession GCA_001435275.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source kefir grains
Latitude Longitude None
Molecule Count N/A
CDS Count 2,210
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 1
Species Taxid 267818
SSU Count 1
Submitter Shanghai Majorbio
Taxid 1423827
Total Gap Length 78
Translation Table 11
tRNA Count (total) 46
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AZGG00000000.1