Ligilactobacillus saerimneri
Isolate HQ 5S/16S/23S 13 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Ligilactobacillus; s__Ligilactobacillus saerimneri
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus saerimneri
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus saerimneri; x__Lactobacillus saerimneri DSM 16049
NCBI Strain Identifiers DSM 16049
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_000423265.1)
Genome Characteristics
CheckM Completeness 99.48%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 4
tRNA Count 13
Contig Count 92
N50 Contigs 48,864 bp
Longest Contig 148,485 bp
Scaffold Count 92
N50 Scaffolds 48,864 bp
Longest Scaffold 148,485 bp
Genome Size 1,692,961 bp
Protein Count 1,722
Coding Density 87.96%
GC Percentage 42.57%
Ambiguous Bases 10
GTDB representative GCA_000423265.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM143516v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369413
Country Sweden
Date 2015-11-6
Genbank Assembly Accession GCA_001435165.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source feces
Latitude Longitude None
Molecule Count N/A
CDS Count 1,679
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 0
Species Taxid 228229
SSU Count 1
Submitter Shanghai Majorbio
Taxid 1122153
Total Gap Length 0
Translation Table 11
tRNA Count (total) 29
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AZFP00000000.1