Levilactobacillus spicheri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Levilactobacillus; s__Levilactobacillus spicheri
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus spicheri
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus spicheri; x__Lactobacillus spicheri DSM 15429
NCBI Strain Identifiers DSM 15429
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.02%
CheckM Contamination 0.62%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 62
N50 Contigs 130,957 bp
Longest Contig 251,476 bp
Scaffold Count 37
N50 Scaffolds 192,187 bp
Longest Scaffold 600,435 bp
Genome Size 2,749,197 bp
Protein Count 2,479
Coding Density 83.21%
GC Percentage 55.92%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143509v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369497
Country Germany
Date 2015-11-6
Genbank Assembly Accession GCA_001435095.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source rice sourdough
Latitude Longitude None
Molecule Count N/A
CDS Count 2,458
Refseq Category representative genome
Seq Rel Date 2015/11/06
Spanned Gaps 25
Species Taxid 216463
SSU Count 1
Submitter Shanghai Majorbio
Taxid 1423805
Total Gap Length 493
Translation Table 11
tRNA Count (total) 57
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AZFC00000000.1