Lacticaseibacillus manihotivorans
Isolate HQ 16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lacticaseibacillus; s__Lacticaseibacillus manihotivorans
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus manihotivorans
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus manihotivorans; x__Lactobacillus manihotivorans DSM 13343 = JCM 12514
NCBI Strain Identifiers DSM 13343
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.48%
CheckM Contamination 1.05%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 2
23S Count 1
tRNA Count 19
Contig Count 356
N50 Contigs 23,941 bp
Longest Contig 121,749 bp
Scaffold Count 335
N50 Scaffolds 25,801 bp
Longest Scaffold 121,749 bp
Genome Size 3,125,880 bp
Protein Count 3,180
Coding Density 85.17%
GC Percentage 47.70%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143503v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369461
Country Colombia
Date 2015-11-6
Genbank Assembly Accession GCA_001435035.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source cassava sour starch fermentation
Latitude Longitude None
Molecule Count N/A
CDS Count 3,099
Refseq Category representative genome
Seq Rel Date 2015/11/06
Spanned Gaps 21
Species Taxid 88233
SSU Count 2
Submitter Shanghai Majorbio
Taxid 1423769
Total Gap Length 702
Translation Table 11
tRNA Count (total) 53
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AZEU00000000.1