Lactobacillus iners
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus iners
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus iners
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus iners; x__Lactobacillus iners DSM 13335
NCBI Strain Identifiers DSM 13335
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_000160875.1)
Genome Characteristics
CheckM Completeness 99.41%
CheckM Contamination 0.44%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 19
Contig Count 58
N50 Contigs 305,969 bp
Longest Contig 352,039 bp
Scaffold Count 58
N50 Scaffolds 305,969 bp
Longest Scaffold 352,039 bp
Genome Size 1,267,657 bp
Protein Count 1,213
Coding Density 90.44%
GC Percentage 32.52%
Ambiguous Bases 9
GTDB representative GCA_000160875.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM143501v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369401
Country Sweden
Date 2015-11-6
Genbank Assembly Accession GCA_001435015.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source urine
Latitude Longitude None
Molecule Count N/A
CDS Count 1,204
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 0
Species Taxid 147802
SSU Count 1
Submitter Shanghai Majorbio
Taxid 525328
Total Gap Length 0
Translation Table 11
tRNA Count (total) 39
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AZET00000000.1