Companilactobacillus paralimentarius
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Companilactobacillus; s__Companilactobacillus paralimentarius
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus paralimentarius
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus paralimentarius; x__Lactobacillus paralimentarius DSM 13238 = JCM 10415
NCBI Strain Identifiers DSM 13238
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.48%
CheckM Contamination 1.15%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 171
N50 Contigs 31,863 bp
Longest Contig 116,761 bp
Scaffold Count 166
N50 Scaffolds 31,863 bp
Longest Scaffold 116,761 bp
Genome Size 2,548,273 bp
Protein Count 2,497
Coding Density 87.79%
GC Percentage 35.10%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143498v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369493
Country Japan
Date 2015-11-6
Genbank Assembly Accession GCA_001434985.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sourdough
Latitude Longitude None
Molecule Count N/A
CDS Count 2,442
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 5
Species Taxid 83526
SSU Count 1
Submitter Shanghai Majorbio
Taxid 1122151
Total Gap Length 50
Translation Table 11
tRNA Count (total) 51
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AZES00000000.1