Lactobacillus helveticus
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus helveticus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus helveticus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus helveticus; x__Lactobacillus helveticus DSM 20075 = CGMCC 1.1877
NCBI Strain Identifiers CGMCC 1.1877
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_000160855.1)
Genome Characteristics
CheckM Completeness 98.38%
CheckM Contamination 0.32%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 259
N50 Contigs 15,647 bp
Longest Contig 58,718 bp
Scaffold Count 257
N50 Scaffolds 15,907 bp
Longest Scaffold 58,718 bp
Genome Size 1,828,717 bp
Protein Count 2,029
Coding Density 86.67%
GC Percentage 36.78%
Ambiguous Bases 12
GTDB representative GCA_000160855.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143494v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369370
Country None
Date 2015-11-6
Genbank Assembly Accession GCA_001434945.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source emmental cheese
Latitude Longitude None
Molecule Count N/A
CDS Count 1,892
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 2
Species Taxid 1587
SSU Count 1
Submitter Shanghai Majorbio
Taxid 585520
Total Gap Length 329
Translation Table 11
tRNA Count (total) 44
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AZEK00000000.1