Liquorilactobacillus capillatus
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Liquorilactobacillus; s__Liquorilactobacillus capillatus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus capillatus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus capillatus; x__Lactobacillus capillatus DSM 19910
NCBI Strain Identifiers DSM 19910
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.48%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 70
N50 Contigs 93,531 bp
Longest Contig 298,424 bp
Scaffold Count 61
N50 Scaffolds 110,492 bp
Longest Scaffold 351,000 bp
Genome Size 2,232,918 bp
Protein Count 2,128
Coding Density 85.77%
GC Percentage 37.63%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143491v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369440
Country China
Date 2015-11-6
Genbank Assembly Accession GCA_001434915.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source isolated from fermented brine used for stinky tofu production
Latitude Longitude None
Molecule Count N/A
CDS Count 2,092
Refseq Category representative genome
Seq Rel Date 2015/11/06
Spanned Gaps 9
Species Taxid 480931
SSU Count 1
Submitter Shanghai Majorbio
Taxid 1423731
Total Gap Length 423
Translation Table 11
tRNA Count (total) 57
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AZEF00000000.1