Companilactobacillus alimentarius
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Companilactobacillus; s__Companilactobacillus alimentarius
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus alimentarius
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus alimentarius; x__Lactobacillus alimentarius DSM 20249
NCBI Strain Identifiers DSM 20249
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_002849895.1)
Genome Characteristics
CheckM Completeness 99.48%
CheckM Contamination 0.52%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 55
N50 Contigs 213,737 bp
Longest Contig 516,935 bp
Scaffold Count 46
N50 Scaffolds 213,737 bp
Longest Scaffold 533,142 bp
Genome Size 2,336,325 bp
Protein Count 2,250
Coding Density 88.89%
GC Percentage 35.40%
Ambiguous Bases N/A
GTDB representative GCA_002849895.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143474v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369426
Country None
Date 2015-11-6
Genbank Assembly Accession GCA_001434745.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source marinated fish product
Latitude Longitude None
Molecule Count N/A
CDS Count 2,204
Refseq Category representative genome
Seq Rel Date 2015/11/06
Spanned Gaps 9
Species Taxid 1602
SSU Count 1
Submitter Shanghai Majorbio
Taxid 1423720
Total Gap Length 357
Translation Table 11
tRNA Count (total) 51
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AZDQ00000000.1