Ligilactobacillus animalis
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Ligilactobacillus; s__Ligilactobacillus animalis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus animalis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus animalis; x__Lactobacillus animalis KCTC 3501 = DSM 20602
NCBI Strain Identifiers DSM 20602
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (8 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.3%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 2
tRNA Count 18
Contig Count 67
N50 Contigs 123,129 bp
Longest Contig 275,224 bp
Scaffold Count 58
N50 Scaffolds 133,927 bp
Longest Scaffold 275,224 bp
Genome Size 1,880,186 bp
Protein Count 1,842
Coding Density 87.78%
GC Percentage 41.07%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143453v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369389
Country None
Date 2015-11-6
Genbank Assembly Accession GCA_001434535.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source dental plaque
Latitude Longitude None
Molecule Count N/A
CDS Count 1,805
Refseq Category representative genome
Seq Rel Date 2015/11/06
Spanned Gaps 9
Species Taxid 1605
SSU Count 1
Submitter Shanghai Majorbio
Taxid 930942
Total Gap Length 426
Translation Table 11
tRNA Count (total) 54
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AYYW00000000.1