Ligilactobacillus hayakitensis
Isolate HQ 5S/16S/23S 16 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Ligilactobacillus; s__Ligilactobacillus hayakitensis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus hayakitensis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus hayakitensis; x__Lactobacillus hayakitensis DSM 18933 = JCM 14209
NCBI Strain Identifiers DSM 18933
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_000615845.1)
Genome Characteristics
CheckM Completeness 97.8%
CheckM Contamination 0.52%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 16
Contig Count 133
N50 Contigs 47,652 bp
Longest Contig 269,222 bp
Scaffold Count 108
N50 Scaffolds 56,894 bp
Longest Scaffold 420,945 bp
Genome Size 1,685,542 bp
Protein Count 1,648
Coding Density 87.14%
GC Percentage 34.03%
Ambiguous Bases N/A
GTDB representative GCA_000615845.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143445v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369399
Country Japan
Date 2015-11-6
Genbank Assembly Accession GCA_001434455.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source feces of thoroughbred horse
Latitude Longitude None
Molecule Count N/A
CDS Count 1,637
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 25
Species Taxid 396716
SSU Count 1
Submitter Shanghai Majorbio
Taxid 1423755
Total Gap Length 1028
Translation Table 11
tRNA Count (total) 67
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AZGD00000000.1