Ligilactobacillus apodemi
Isolate HQ 5S/16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Ligilactobacillus; s__Ligilactobacillus apodemi
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus apodemi
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus apodemi; x__Lactobacillus apodemi DSM 16634 = JCM 16172
NCBI Strain Identifiers DSM 16634
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.48%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 17
Contig Count 66
N50 Contigs 104,724 bp
Longest Contig 458,451 bp
Scaffold Count 54
N50 Scaffolds 164,516 bp
Longest Scaffold 999,215 bp
Genome Size 2,091,181 bp
Protein Count 2,065
Coding Density 88.18%
GC Percentage 38.60%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143440v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369391
Country Japan
Date 2015-11-6
Genbank Assembly Accession GCA_001434405.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source feces; wild Japanese wood mouse
Latitude Longitude None
Molecule Count N/A
CDS Count 2,015
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 12
Species Taxid 307126
SSU Count 1
Submitter Shanghai Majorbio
Taxid 1423724
Total Gap Length 475
Translation Table 11
tRNA Count (total) 55
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AZFT00000000.1