Limosilactobacillus gastricus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Limosilactobacillus; s__Limosilactobacillus gastricus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus gastricus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus gastricus; x__Lactobacillus gastricus DSM 16045
NCBI Strain Identifiers DSM 16045
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.18%
CheckM Contamination 0.27%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 68
N50 Contigs 82,805 bp
Longest Contig 126,654 bp
Scaffold Count 66
N50 Scaffolds 82,805 bp
Longest Scaffold 126,654 bp
Genome Size 1,848,461 bp
Protein Count 1,854
Coding Density 90.54%
GC Percentage 41.64%
Ambiguous Bases 17
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143436v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369419
Country Sweden
Date 2015-11-6
Genbank Assembly Accession GCA_001434365.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source gastric biopsies; stomach mucosa
Latitude Longitude None
Molecule Count N/A
CDS Count 1,829
Refseq Category representative genome
Seq Rel Date 2015/11/06
Spanned Gaps 2
Species Taxid 227942
SSU Count 1
Submitter Shanghai Majorbio
Taxid 1423749
Total Gap Length 272
Translation Table 11
tRNA Count (total) 36
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AZFN00000000.1