Lentilactobacillus otakiensis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lentilactobacillus; s__Lentilactobacillus otakiensis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus otakiensis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus otakiensis; x__Lactobacillus otakiensis DSM 19908 = JCM 15040
NCBI Strain Identifiers DSM 19908
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.06%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 26
N50 Contigs 243,171 bp
Longest Contig 640,906 bp
Scaffold Count 21
N50 Scaffolds 313,629 bp
Longest Scaffold 640,906 bp
Genome Size 2,346,188 bp
Protein Count 2,264
Coding Density 87.41%
GC Percentage 42.39%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143414v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369465
Country Japan
Date 2015-11-6
Genbank Assembly Accession GCA_001434145.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source non-salted pickle solution used in production of sunki (Japanese traditional fermented leaves and stems of red turnips)
Latitude Longitude None
Molecule Count N/A
CDS Count 2,244
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 5
Species Taxid 481720
SSU Count 2
Submitter Shanghai Majorbio
Taxid 1423780
Total Gap Length 50
Translation Table 11
tRNA Count (total) 55
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AZED00000000.1