Lactobacillus johnsonii
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus johnsonii
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus johnsonii
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus johnsonii; x__Lactobacillus johnsonii ATCC 33200
NCBI Strain Identifiers ATCC 33200
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_000159355.1)
Genome Characteristics
CheckM Completeness 99.22%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 3
23S Count 4
tRNA Count 19
Contig Count 37
N50 Contigs 200,944 bp
Longest Contig 317,645 bp
Scaffold Count 37
N50 Scaffolds 200,944 bp
Longest Scaffold 317,645 bp
Genome Size 1,773,599 bp
Protein Count 1,781
Coding Density 89.14%
GC Percentage 34.43%
Ambiguous Bases 8
GTDB representative GCA_000159355.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM143397v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369381
Country None
Date 2015-11-6
Genbank Assembly Accession GCA_001433975.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood
Latitude Longitude None
Molecule Count N/A
CDS Count 1,719
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 0
Species Taxid 33959
SSU Count 3
Submitter Shanghai Majorbio
Taxid 525330
Total Gap Length 0
Translation Table 11
tRNA Count (total) 40
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AZCY00000000.1